publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. Deciphering the complex clonal heterogeneity of polycythemia vera and the response to interferon alfa
    Milena Kalmer, Martin Grasshoff, Tiago Maié, Kristina Pannen, Marcelo AS Toledo, and 6 more authors
    Blood advances, 2025
    DOI
  2. Species-Specific Traits Shape Genetic Diversity During an Expansion–Contraction Cycle and Bias Demographic History Reconstruction
    Ravi Vishwakarma, Gabriele Maria Sgarlata, David Soriano-Paños, Rita Rasteiro, Tiago Maié, and 3 more authors
    Molecular Ecology, 2025
    DOI
  3. PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders
    Mehdi Joodaki, Mina Shaigan, Samaneh Samiei, James Nagai, Tiago Maié, and 2 more authors
    bioRxiv, 2025
    DOI
  4. scACCorDiON: a clustering approach for explainable patient level cell–cell communication graph analysis
    James S Nagai, Tiago Maié, Michael T Schaub, and Ivan G Costa
    Bioinformatics, 2025
    DOI
  5. Developmental factors drive the compartmentalised and discontinuous maturation of the small intestinal epithelium during the early postnatal period
    Johannes Schöneich, Aline Dupont, Stefan Schlößer, Matthias A Schmitz, Isabel Richter, and 6 more authors
    bioRxiv, 2025
    DOI
  6. The effect of habitat loss and fragmentation on isolation by distance and divergence
    Gabriele Maria Sgarlata, Tiago Maié, Tiago Zoeten, Jordi Salmona, Rita Rasteiro, and 1 more author
    Proceedings of the National Academy of Sciences, 2025
    DOI

2024

  1. Calreticulin and JAK2V617F driver mutations induce distinct mitotic defects in myeloproliferative neoplasms
    Kristin Holl, Nicolas Chatain, Susanne Krapp, Julian Baumeister, Tiago Maié, and 5 more authors
    Scientific Reports, 2024
    DOI
  2. Cancer-associated fibroblasts reveal aberrant DNA methylation across different types of cancer
    Marco Schmidt, Tiago Maié, Thorsten Cramer, Ivan G Costa, and Wolfgang Wagner
    Clinical epigenetics, 2024
    DOI
  3. Inflammation plays an important role in the progression of chronic myeloid leukemia
    Melanie Langhammer, Julia Schöpf, Timo Jaquet, Katharina Horn, Moritz Angel, and 23 more authors
    Cancer Research, Mar 2024
    DOI
  4. Small epigenetic signatures for cell type classification and deconvolution
    Tiago Maié
    Dissertation, RWTH Aachen University, 2024, Mar 2024
    DOI

2023

  1. CimpleG: finding simple CpG methylation signatures
    Tiago Maié, Marco Schmidt, Myriam Erz, Wolfgang Wagner, and Ivan G. Costa
    Genome Biology, Mar 2023
    DOI
  2. KIT D816V mast cells derived from induced pluripotent stem cells recapitulate systemic mastocytosis transcriptional profile
    Marcelo AS Toledo, Xuhuang Fu, Tiago Maié, Eva M Buhl, Katrin Götz, and 6 more authors
    International Journal of Molecular Sciences, Mar 2023
    DOI
  3. Mast cell deficiency prevents BCR:: ABL1 induced splenomegaly and cytokine elevation in a CML mouse model
    Melanie Langhammer, Julia Schöpf, Timo Jaquet, Katharina Horn, Moritz Angel, and 6 more authors
    Leukemia, Mar 2023
    DOI
  4. Representation and biases: Pollen–vegetation relationships and their contribution to the study of fossil pollen records in SW Iberia
    Cristina Val-Peón, Tiago Maié, José Antonio López-Sáez, Juan Ignacio Santisteban, Rosa Mediavilla, and 1 more author
    Review of Palaeobotany and Palynology, Mar 2023
    DOI
  5. Myelofibrosis at diagnosis is associated with the failure of treatment-free remission in CML patients
    Henrike Jacobi, Margherita Vieri, Marlena Bütow, Carolina Y Namasu, Laura Flüter, and 6 more authors
    Frontiers in pharmacology, Mar 2023
    DOI
  6. P653: CML LONG-TERM LEUKEMIC STEM CELL PERSISTENCE IS INFLUENCED BY MYELOFIBROSIS AT DIAGNOSIS
    Henrike Jacobi, Margherita Vieri, Carolina Y. Namasu, Laura Flüter, Ivan G. Costa, and 7 more authors
    HemaSphere, Mar 2023
    DOI
  7. Targeted DNA methylation analysis facilitates leukocyte counts in dried blood samples
    Wouter HG Hubens, Tiago Maié, Matthis Schnitker, Ledio Bocova, Deepika Puri, and 6 more authors
    Clinical Chemistry, Mar 2023
    DOI
  8. EphrinA5 regulates cell motility by modulating Snhg15/DNA triplex-dependent targeting of DNMT1 to the Ncam1 promoter
    Can Bora Yildiz, Tathagata Kundu, Julia Gehrmann, Jannis Koesling, Amin Ravaei, and 9 more authors
    Epigenetics & Chromatin, Oct 2023
    DOI
  9. M cell maturation and cDC activation determine the onset of adaptive immune priming in the neonatal Peyer’s patch
    Natalia Torow, Ronghui Li, Thomas Charles Adrian Hitch, Clemens Mingels, Shahed Al Bounny, and 6 more authors
    Immunity, Oct 2023
    DOI

2022

  1. On the genetic consequences of habitat contraction: edge effects and habitat loss
    Gabriele Maria Sgarlata, Tiago Maié, Tiago Zoeten, Rita Rasteiro, and Lounès Chikhi
    bioRxiv, Oct 2022
    DOI
  2. Targeting cytokine-induced leukemic stem cell persistence in chronic myeloid leukemia by IKK2-inhibition
    Marlena Bütow, Fabio J Testaquadra, Julian Baumeister, Tiago Maié, Nicolas Chatain, and 6 more authors
    Haematologica, Oct 2022
    DOI

2021

  1. Early and late stage MPN patients show distinct gene expression profiles in CD34+ cells
    Julian Baumeister, Tiago Maié, Nicolas Chatain, Lin Gan, Barbora Weinbergerova, and 6 more authors
    Annals of hematology, Oct 2021
    DOI
  2. DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification
    Clémentine Decamps, Alexis Arnaud, Florent Petitprez, Mira Ayadi, Aurélia Baurès, and 46 more authors
    BMC Bioinformatics, Oct 2021
    DOI

2020

  1. Hypoxia-inducible factor 1 (HIF-1) is a new therapeutic target in JAK2 V617F-positive myeloproliferative neoplasms
    Julian Baumeister, Nicolas Chatain, Annika Hubrich, Tiago Maié, Ivan G Costa, and 6 more authors
    Leukemia, Oct 2020
    DOI
  2. Therapeutic inhibition of Fc\gammaRIIb signaling targets leukemic stem cells in chronic myeloid leukemia
    Oliver Parting, Samantha Langer, Maja Kim Kuepper, Caroline Wessling, Shaoguang Li, and 6 more authors
    Leukemia, Oct 2020
    DOI
  3. Hunting and its Recent Demographic Consequences in Papio papio in Guinea-Bissau Assessed Through Social and Molecular Data
    Maria Joana Silva, Federica Gerini, Isa Aleixo-Pais, Tiago Maié, Filipa Borges, and 6 more authors
    In FOLIA PRIMATOLOGICA, Oct 2020
  4. What Do We Know About West African Red Colobus? Inferences from Multidisciplinary Data
    Tania Minhos, Lounes Chikhi, Tiago Maié, Maria Joana Silva, and Michael Bruford
    In FOLIA PRIMATOLOGICA, Oct 2020
  5. Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites
    Marco Schmidt, Tiago Maié, Edgar Dahl, Ivan G Costa, and Wolfgang Wagner
    Bmc Biology, Oct 2020
    DOI

2019

  1. JAK2V617F but not CALR mutations confer increased molecular responses to interferon-αvia JAK1/STAT1 activation
    Julia Czech, Sabrina Cordua, Barbora Weinbergerova, Julian Baumeister, Assja Crepcia, and 6 more authors
    Leukemia, Oct 2019
    DOI
  2. Stem cell persistence in CML is mediated by extrinsically activated JAK1-STAT3 signaling
    Maja Kim Kuepper, Marlena Bütow, Oliver Herrmann, Janine Ziemons, Nicolas Chatain, and 6 more authors
    Leukemia, Oct 2019
    DOI
  3. Differential roles of STAT1 and STAT2 in the sensitivity of JAK2V617F-vs. BCR-ABL-positive cells to interferon alpha
    Claudia Schubert, Manuel Allhoff, Stefan Tillmann, Tiago Maié, Ivan G Costa, and 6 more authors
    Journal of hematology & oncology, Oct 2019
    DOI

2018

  1. How Demographic History Assists the Conservation of Two Arboreal Primates
    Tania Minhos, Tiago Maié, Lounes Chikhi, and Maria Frereira Silva
    In FOLIA PRIMATOLOGICA, Oct 2018